species:   Rhsol
pid:       PID0491
parent:    Rhi-milR-112
paralog:   
locus:     KB317708.1:469343-469428
matures:   ['UAUGGCCGUGGAUACUUUGCAA', 'GUGACUUGUAUCCAUCCCAUUAAGC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317708.1:469343-469428

45472 out of bounds
59493 alignments
57 proper strand
41 stranded perfect matches

        *************************                 ****************************        
UUCGAAGUCCUAUGGCCGUGGAUACUUUGCAAUCCCAAAGUGGGUAUAUAUGUGUGACUUGUAUCCAUCCCAUUAAGCACUUGGAC
.((.((((.((((((..((((((((.(((((..((((...))))........)))))...)))))))).))))..)).)))).)).
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=1 c
-----------------------------------------------------GUGACUUGUAUCCAUCCCAUUAAGC-------- l=25 a=0 c*
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=15 ma
----------------------------------------------------UGUGACUUGUAUCCAUCCCAUUAAGC-------- l=26 a=0 ma*

-------UCCUAUGGCCGUGGAUACUUUGCA------------------------------------------------------- l=24 a=1 
---------CUAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=21 a=1 
---------CUAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=24 a=1 
----------UAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=20 a=12 
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=1 (c)
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=15 (ma)
----------UAUGGCCGUGGAUACUUUGCcAU----------------------------------------------------- l=23 a=1 
----------UAUGGCCGUGGAUACUUUGCAAa----------------------------------------------------- l=23 a=1 
----------UAUGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=24 a=3 
----------UAUGGCCGUGGAUACUUUGCAAUa---------------------------------------------------- l=24 a=1 
----------UAUGGCCGUGGAUACUUUGCAAUCa--------------------------------------------------- l=25 a=1 
-----------AUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=19 a=1 
------------UGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=21 a=1 
------------UGGCCGUGGAUACUUUGCAAUu---------------------------------------------------- l=22 a=1 
------------UGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=22 a=1 
------------UGGCCGUGGAUACUcUGCAAUCC--------------------------------------------------- l=23 a=1 
------------UGGCCGUGGAUACUUUGCAAUCu--------------------------------------------------- l=23 a=6 
------------UGGCCGUGGAUACUUUGCAAUCa--------------------------------------------------- l=23 a=2 
------------UGGCCGUGGAUACUUUGCAAUCCC-------------------------------------------------- l=24 a=1 
-------------GGCCGUGGAUACUUUGCAAUCu--------------------------------------------------- l=22 a=1 
----------------------------------------UGGGUAUAUAUGUGUGACUUGUA----------------------- l=23 a=1 
----------------------------------------------------UGUGACUUGUAUCCAUCCCAUUAA---------- l=24 a=1 
------------------------------------------------------UGACUUGUAUCCAUCCCAUUAAGCA------- l=25 a=1 
---------------------------------------------------------CUUGUAUCCAUCCCAUUAAGCg------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-111111001100
fn-101
